Foggy, outboard motors are entirely different than I/O, which have a cutout in the transom. They outboard engine bracket has a number of holes in it which allows adjustment up and down. An outboard motor is easily moved up and down on the transom; I use an "A" frame or a sturdy tree limb and a come along or a chain hoist to take the weight of the motor, remove the bolts and then move up or down the appropriate amount. There are a variety of other ways to do this. Before Tim changes props, we need to know that the outboard is set properly. I happened to own the boat that Tim owns now about 5 years ago. At that time the outboard was a 1996 Evinrude which was properly set. The engine got 5500 RPM at WOT with the correct prop on it. 15" pitch for seal leavel and 13" pitch for Lake Powell. Tim has put a new engine on it recently. We do not know if it is properly set. An outboard which is set too low will not achieve proper WOT, even with the best prop. To be technical we don't know if his tach is accurate either, and some would check the tach (which is also fairly easy to do).
We do not know what prop Tim has currently on the boat. However I suspect that it is not 15" diameter, since that diameter will not fit on a 90 hp E- Tec. I am suggesting that if he has a 15" prop and wants to bring the RPM up 400, he should drop the pitch by 2" Of course there are many other things which can be varied in the outboard prop--such as cupping, rake and number of blades.