If these are truely on the side walls, of the Tom Cat Hull, then it is from the rail rivets--and common. There I would remove those offending rivets, redrill the hole, and put machine screw/bolts thru the side of the hull, then seal on the inside with either a product like the Boat Life, Lifeseal (combination silicone and single part urethane sealant). If you just want to seal them now, I would clean the area up and put epoxy over this area where the leak is--then down the line, pull the rub rail, and redo all of the fasteners.
If the fittings leaking are from the deck, such as the pulpit or stanchons, then it is a different story, if the bolts go thru the cored part of the deck. The outer flange may not be cored, but the core starts a couple of inches in. If you have a problem there, I would pull all of the bolts holding the piece in place, lift it off, and check for core--if core is present, then it has to be drilled out, backfilled and a new hole drilled for the machine screw ("bolt") holding the pulpit or stanchon in place. Then you use sealant of your choice. I do like Boat Life Life Seal for many applications, especially plastics to fibergass, and it is one of those which can be used here. I have also used 4200 and 5200. I did this on the Cal 46 and replaced all machine screws thru the deck. That had a plywood core, and I sealed each hole individually, before the bolt was applied and I used 5200 in that application. The boat was used for transoceanic voyages, and I wanted a "permenant" seal.