I suspect that on the stb side, that in the very bottom of the aft bilge the hull is solid. The bilge pump on my boat is offset to the outside in this location. I was going to try a second transducer there to see if it worked.
I have the Lowrance LXC 26 HD. I keep the bottom at all speeds up into the 40's. The only time I have lost the bottom, was when a small stick kicked up the the transducer. The place where there is not too much turbulance and yet not causing issues for the water flow is relitatively narrow.--less than 1/4" depth--so you may have to play with the transducer position to get the best results. I don't use a triducer. There is some use of a paddle wheel when trolling and there is current--so you know the speed of the boat thru the water--but for 90% of navigation speed over the ground--which is what the GPS gives, is more than adequate.
Consider mounting a piece of starboard on the hull--then screw the transducer into the starboard. You don't want to put any more holes in the boat than necessary! With the starboard (roughed up surface) put on with 4200, it will be sealed. Then you can adjust the screws of the transducer to your hearts content.
I only got a 600 watt 200 khz transducer because we stay in less than 200 feet of water most of the time--I am sure that the 1 KW--50/200 would work just as well.
Use cable clips to route the cable up to the edge of the Armstrong bracket and around its side. Cut the hole in the transom big enough for the cable's fitting, and then use one of the cable seals over this hole. Be sure and seal this hole with epoxy, before you run the cable thru it. The hole is at the level of the top of the Armstrong bracket.
If it warms up tomarrow, I'll get a picture of the Starboard block and mounting location--You want clean water flow across the transducer.